Sergey N. Yarmolenko
Past Research (1981-1996)
Synthesis, structure and
properties of mono- and difluorine substituted unsaturated ketones
Acid-base equilibria of carbonyl containing
compounds in the ground and excited states
Structure, twisting power and
photochemical properties of chiral dopants in cholesteric media
Spectroscopy and photostability of laser
dyes
Related works and equipment
Bibliography
Synthesis, structure and properties of mono- and
difluorine substituted unsaturated ketones
Unsaturated ketones are of great significance in synthetic organic chemistry as well as
a subject for theoretical investigations. a,bEnones with
halogen atoms in vinylic fragment show high reactivity towards nucleophilic reagents and
are suitable objects to study halogen atom influence on structure and transmission of the
electronic effects in conjugated systems. Fluorine containing compounds are of particular
interest because of the small size and unique electronic properties of the fluorine atom
in conjugated systems. Fluorinated unsaturated ketones were almost unavailable at the
beginning of this study. Fluorine containing 1,3diaryl-1propene-3ones (chalcones)
seemed to be the most interesting objects because their properties could be widely
modified by substitutients in benzene rings. Therefore the investigation of fluorine
influence upon structure and reactivity of unsaturated ketones based on chalcone as a
model seemed important from both practical and theoretical points of view.
Conclusions:
- We developed a convenient general method for the synthesis aryl substituted trans-a,bdifluoroenones based on low temperature (-80 -100C) interaction
between a,bdifluorostyryllithium derivatives and
dimethylformamide or other carboxylic acid dimethylamides [1,2]:

- By the methods X-ray [3], dipole moments, NMR and IR [2-4] it was found that a,b-difluorochalcones exist in non-planar sterically hindered S-trans
conformation (Figure 1) unlike hydrogen analogous which are S-cis
structure in solid state. Such a structure is evidently caused by a non-valent
fluorine atom p,p-interaction between Fb and benzene ring of aroyl fragment of molecule. This
assumption corresponds to results of NMR 1H, 13C and 19F
investigation of fluorinated and non-fluorinated chalcones. aFluorochalcones
can exist in both S-cis and S-trans conformations in solid state (Figure 2) and position of conformational equilibrium in solutions
strongly depend on solvent polarity (Figure 3). Stability of S-trans
conformers can be the result of p,p-interaction between Fa
and O orbitals (similar effect was observed in a-halogen
ketones).
- It was found that difluorovinylic alcohols, which are obtained from a,bdifluoroenones,
quantitatively transform into correspondent afluoroenones.
This new rearrangement was in a basis of the in situ method of synthesis afluoroketones [2,4]:

- It was shown that difluoroenones could be a source for obtaining various types of
fluorine containing organic compounds. It was found that LiBH4 quantitatively
reduces the carbonyl group and difluorovinylic group is a p-orientant in
electrophilic reactions of aromatic rings. Vinylic group quantitatively adds halogens (Cl2,
Br2) forming a mixture of diastereomers. Reactions with Cnucleophiles
(malonic acid dinitrile, Wittig reagent, and quaternary salts of 2methyl-benzothiazole
or 1,2,3,3tetramethylindolenine) involve carbonyl group forming corresponding
unsaturated compounds [2]. S- and Onucleophiles react with bcarbon
of difluoroenones substituting Fb. Nnucleophiles
can react with carbonyl group and bcarbon atom:

- The basicity of fluoroenones has been studied because many reactions of enones with
nucleophilic reagents proceed under acidic catalysis [2,5]. An essential decrease of
fluorochalcones basicity as compared to non-fluorinated chalcones makes them considerably
less reactive in acid-catalyzed hydrolysis. It was shown that pre-equilibrium (first
stage) has a substantial influence on the general reaction rate. Data obtained (pKBH+ and k0) can be used for prediction of reactivity
fluoroenones depend on reaction condition.

Acid-base properties of carbonyl containing compounds in
the ground and excited states
Coumarin, iminocoumarin and carbostyril derivatives are considered as perspective laser
dyes in the near UV and visible region. These compounds show effective fluorescence
strongly dependent on solvent acidity. In particular well-known laser dye
4methyl-7hydroxycoumarin has intensive fluorescence of neutral, anionic and tautomeric
forms in a wide spectral region. It was considered that tautomeric form of the dye is
generated from anionic form as a result of an excited state proton transfer (ESPT).
However, our preliminary studies have shown that carbonyl group bacisity of 7-substituted
coumarins increases significantly under electronic excitation [6]. Moreover, it was found
that the tautomerism efficiency strongly depends on the nature of proton donor reagent and
structure of Hbonded complexes [7]. We studied absorbance and fluorescence of these
complexes including time-resolved nanosecond fluorometry technique, obtained bacisity
constants in ground and excited states and H-complexes formation constants in non-aqueous
systems for coumarin [6-8], iminocoumarin [9] and carbostyril derivatives (see Table).
Table. Constants of acid-base equilibria (pKBH+ and pK*), H-complex formation (DnOH and
KAH) and constants of hydrolysis (k)
Compounds |
Ki |
System |
Method |
Ref. |

|
pKBH+,
pK*
DnOH
KAH
KAH |
H2O-H2SO4
CCl4
Toluene-TFA
Hexane-TFA |
UV, NMR
IR
UV, Fluorescence
UV, Fluorescence |
6-8 |

|
pKBH+,
pK*
DnOH
KAH
KAH |
H2O-H2SO4
CCl4
Toluene-TFA
Hexane-TFA |
UV
IR
UV, Fluorescence
UV, Fluorescence |
8 |

|
pKBH+
k |
H2O-EtOH
H2O-EtOH |
UV, Fluorescence
UV |
9 |
Note: pKBH+ and pK* - constants of acid-base
equilibria in S0 and S1* states respectively; DnOH
-spectral shifts in phenol complexes (1:1), KAH - constants of H-complex
formation with trifluoroacetic acid (TFA), k - constants of hydrolysis.
Conclusions:
- Tautomerism efficiency in the singlet excited state depends on the structure of H-bonded
complex and proton-donor properties of acidic reagent. Detail analysis UV and fluorescence
spectra combined with fluorescence quantum yields makes it possible to obtain H-bond
formation constants, structure of complexes and their ability to ESPT (Figure 4).
- Pathways of ESPT depend on proton mobility in the system (Figure 5).
For example, tautomeric form can be generated from cationic form or synchronously in
non-aqueous media (proton transfer can occur only in H-complexes).
- In the case of high proton acceptor ability of compounds tautomeric forms can form in
the ground state. It was found that the position of tautomeric equilibria of
7hydroxyiminocoumarins in S0-state depends on water concentration in the
system. Constants of tautomeric equilibria in ground state were obtained for system EtOH-H2O:

- Stability of tautomeric forms in ground state depends on electronic structure of
compounds. For example, it was found that salt of 2-hydroxy-7-aminobenzopirilium (analog
of 7hydroxycoumarin tautomeric form) is stable in non-aqueous systems though only using
photochemical reaction can generate it.
Structure, twisting power and photochemical
properties of chiral dopants in cholesteric media
The ability of chiral organic compounds to induce a helical superstructure in the
nematic mesophase (i.e. "twisting power") and the dependence of this ability on
the molecular structure as well, is an important field of study in the physical chemistry
of liquid crystal systems (LCS). This research was concerned with the creation approach to
structural chemical problems in prediction of twisting power of chiral organic compounds.
Structure of chiral diastereomeric 1R,4R and 1R,4S E-isomers pmenthane-3ones
[10,11], ()Saphenyl and ()Sabenzylethylamines [12], and (1R,4R)2aroyloxymethylene
menthane derivatives [13] have been studied by using Xray, NMR and molecular mechanics
methods. It was shown that the good correlation between Xray and molecular mechanics
data gives the possibility to use structural chemical calculations for analysis of various
types of chiral structures for both understanding the phenomenon of nematic phase twisting
and searching for new chiral components of induced LCS. High twisting power of these
compounds have been analyzed by using dissymmetry functions, axes of polarizability and
inertia, anysometry etc. compared to experimental data.
Quantitative investigations of E,Z-photoisomerization of chiral dopants
(-)2arylidene-pmenthanones were carried out using solvents of different
nature and various LC matrices [14,15]. An abnormal high efficiency E,Z-photoisomerization
in comparison to backward reaction were interpreted by using quantum chemical calculations
(MNDO, AM1) and molecular mechanics. It was found that the twisting power in nematic LCS
is essentially lower for the chiral Z-isomers than for the corresponding E forms. The
change in the sign of the twisting power and the temperature dependence of the helix step
have been determined [16].

It was shown that LCS with helical supermolecular structures induced by chiral
photosensitive dopants present interesting perspectives for optical data processing.
Structural and dynamical studies of optically induced effects in Smectic A and C*
liquid crystals shown that smectic materials (for example, octylcyanobiphenyl) with
photosensitive molecules p,p'-diheptylazobenzene are capable to the formation of
light-induced strongly scattering textures which can be stabilized by polymeric network
[17]. The written information can be erased by another beam with shorter wavelength.
Spectroscopy and photostability of laser dyes
The prediction of photostability is the essential part of directed search of new
effective fluorescent dyes. For this purpose we developed an experimental technique and
theoretical approach.
A comparative study of photostability under laser pulsed (XeCl, 308 nm) and lamp (Hg,
313 and 365 nm) excitation has been carried out for the series of 2,5-diarylsubstituted
oxazoles, oxadiazoles and 1,3,4triazoles, which are effective sensitizers and laser
dyes.
The transition density matrix technique was used for theoretical analysis of pathways
and efficiencies of 5-membered heterocycle photoreactions. We have calculated the indices,
which describe photoisomerization probability: excitation localization on the heterocycle
atoms and that for the bonds, the indices of bond formation/destruction probability. The
indices have been obtained on the base of perturbation theory for excited states.
Experimentally observed tendencies for changes of azoles photostability have been
interpreted as follows:
- the increase of N atom number in heterocycle molecule leads to the increase of
photostability of this molecule. This is explained as a result of the decrease of
probability for both the triplet reaction proceeding via bicyclic intermediates (2-5 bond
formation) and the singlet isomerization through azirine intermediates (2-4 bond
formation);
- the photostability of heterocycles grows considerably with the increase of phenyl
group number;
- the quantum yields of 2,5-diaryloxazoles photodestruction are highly influenced by
substituent electronic effects compared with 2,5-diaryloxadiazoles and 1,3,4-triazoles.
Application of index approach to similar photoreactions gives the possibility to
describe the tendencies in photostability changes as it has been shown for these
compounds.
The structure of some sterically hindered fluorescent compounds was studied using
Xray, UV and IR methods (Figure 6). It was shown that an
abnormal Stokes shift is caused by the structural relaxation of the excited states
[18,19].
Related works:
- Laboratory methods for analysis of chemical equilibria, kinetics of chemical and
photochemical reactions (UV, IR and fluorescence).
- Correlations between properties and parameters of organic compounds (UV, IR and NMR
spectroscopy, constants of chemical reactions and equilibria).
- Quantum-chemical calculations of spectral and energetic properties of organic compounds
(methods PPP, MNDO, AM1)
- Experimental technique for time-resolved nanosecond fluorometry and laser flash
photolysis.
- Various aspects of fluorescent analysis (spectral correction of reabsorption, analysis
of equipment performance, 3D-spectra of fluorescence).
- Developed equipment (hardware & software) for photochemical and fluorescent
experiments. Applications included software support for standard and unique techniques:
spectral analysis, kinetics, chromatography, laboratory spectral database, and
photochemistry, pre- and postprocessing for quantum chemical and molecular mechanics
calculations.
Equipment:
Spectrophotometers: Specord M40, Specord M80, Specord M85, Hitachi-3210
Spectrofluorimeters: Hitachi-850, Hitachi-4010.
Chromatographs: HP-1030, Milichrom-4, Chrom-5.
NMR spectrometers: Bruker-200, Varian-300.
Lasers: XeCl excimer laser (8 ns, 10 -100 Hz)
Nonstandard equipment: Nanosecond spectrofluorometer and photochemical equipment
(lamp and laser)
Selected bibliography
- Yarmolenko S.N., Fialkov Yu.A., Kremlyov M.M., Yagupol'skii L.M. "
Fluorine-Containing chalcones. I. Synthesis of a,bDifluorochalcones",
Journal of organic chemistry of the USSR, 1988, Vol. 24, N 12, Part. 2, pp. 2334 -
2339.
- Yarmolenko S.N., Cherednichenko P.G., Kremlyov M.M., Fialkov Y.A., Yagupol'skii L.M.
"Aryl substituted a,b-difluorovinylcarbonyl
compounds", Proceedings of the Second Soviet-West German Symposium on Fluorine
Chemistry, Novosibirsk, USSR, 1988, pp. 1 - 18.
- Tret'yak S.M., Yarmolenko S.N., Fialkov Yu.A., Yagupol'skii L.M. "
Fluorine-Containing Chalcones. II. Conformations of a,bDifluorochalcones
and Structure of 4'-Methyl- a,bdifluorochalcone", Journal
of organic chemistry of the USSR, 1989, Vol. 25, N 9, part. 2, pp. 1762 - 1766.
- Yarmolenko S.N., Fialkov Yu.A., Yagupol'skii L.M. " Fluorine-Containing Chalcones.
III. Rearrangement of 1,3-Diaryl-1-2-difluoro-1-propen-3-ols to aFluorochalcones.
", Journal of organic chemistry of the USSR, 1989, Vol. 25, N 9, Part. 2, pp.
1767 - 1774.
- Yarmolenko S.N., Semenkova G.P., Fialkov Yu.A., Yagupol'skii L.M. "
Fluorine-Containing Chalcones IV. Investigation of the Basicity of 4- and 4'-Substituted aFluoro- and a,bDifluorochalcones.
Mechanism of Hydrolysis of a,bDifluorovinylcarbonyl Compounds
in Sulfuric Acid-Water System", Journal of organic chemistry of the USSR,
1990, Vol. 26, No 4, Part 2, pp. 726 - 737.
- Ponomaryov O.A., Vasina E.R., Yarmolenko S.N., Mitina V.G. "Basicity of coumarin
derivatives in the ground and excited states", Journal of general chemistry of the
U.S.S.R., 1985, Vol. 55, N 1, Part. 2, pp. 158 - 161.
- Ponomaryov O.A., Vasina E.R., Yarmolenko S.N., Mitina V.G. "Prototropic
transformations of 7hydroxy-4-methylcoumarin in non-aqueous media", Journal of
general chemistry of the U.S.S.R., 1988, Vol. 58, N 2, Part 2, pp. 381 - 388.
- Ponomaryov O.A., Vasina E.R., Yarmolenko S.N., Mitina V.G., Pivnenko N.S.
"Acid-base and spectral luminescence properties of derivatives of coumarin and
carbostyril", Journal of general chemistry of the U.S.S.R., 1990, Vol. 60, N
5, part 2., pp. 1035 - 1042.
- Karasev A.A., Lukatskaya L.L., Rubtsov M.I., Zhykol E.K., Yarmolenko S.N., Ponomaryov
O.A. "Synthesis, protlytic equilibria and stability of
2-amino-3-(2-benzimidazolyl)-1'-benzopyrilium salts in alchohol-water media", Russian
Journal of General Chemistry, 1995, Vol. 65, N 9, pp. 1547 - 1557 (in Russian issue).
- Kulishov V.I., Kutulya L.A., Tolochko A.S., Vaschenko V.V., Yarmolenko S.N., Mitkevich
V.V., Tret'yak S.M. "Molecular and crystal structures of diastereomeric
()-2[p-chlorbenzoyl)-oxymethylene]-p-menthane-3-ones - effective chiral components of
induced cholesteric systems. 1. cis-Diasteromer", Soviet Physics, Crystallography,
1991, Vol. 36, N 5, pp. 669 - 674.
- Kutulya L.A., Kulishov V.I., Tolochko A.S., Yarmolenko S.N., Vaschenko V.V., Novikova
I.E. "Molecular and crystal structures of diastereomeric
(-)-2[p-chlorbenzoyl)-oxymethylene]-p-menthane-3-ones - effective chiral components of
induced cholesteric systems. II. trans-Diastereomer", Soviet Physics,
Crystallography, 1992, Vol. 37, N 1, pp. 52 - 58.
- Kutulya L.A., Semenkova G.P., Yarmolenko S.N., Fedorkova S., Novikova I.E., Patsenker
L.D. "New chiral imines on basis S-a-phenyl- and S-a-benzylethylamines in induced cholesteric and smectic mesophases I.
Structure and twisting power of chiral dopants in induced cholesteric mesophases
4-alkyl-4'-cyanobiphenyles", Kristallographiya, 1993, Vol. 38, N 1, pp. 183 -
194.
- Shapiro Yu.E., Kutulya L.A., Kalyusky A.P., Pivnenko N.S., Vaschenko V.V.
"Conformational analysis of diastereomeric (-)-2-aroyloxymethylene-n-menthane-3-ones
derivatives by the PMR method I. Trans-diastereomers", Russian Journal of General
Chemistry, 1993, Vol. 63, N 6, pp. 1381 - 1390 (in Russian issue).
- Yarmolenko S.N., Kutulya L.A., Vashchenko V.V., Chepeleva L.V. "Photosensitive
chiral dopants with high twisting power" Liquid Crystals, 1994, Vol. 16, N 5,
pp. 877 - 882.
- Yarmolenko S.N., Chepeleva L.V., Kutulya L.A., Vaschenko V.V., Drushlyak T.G.,
Ponomaryov O.A. "Photochemical properties of chiral 2-arylmethylene-p-menthane-3-ones",
Russian Journal of General Chemistry, 1995, Vol. 65, N 1, part 2., pp. 127 - 136.
- Kutulya L.A., Yarmolenko S.N., Vashchenko V.V., Chepeleva L.V., Patsenker L.D.,
Ponomarev O.A. "Molecular structure of isomeric 2-arylidene derivatives of pmenthanones
and p-(4-menthen)ones and their ability to coil the nematic mesophase", Russian
Journal of Physical Chemistry, 1995, Vol. 69, N 1, pp. 80 - 86.
- Folks W.R., Reznikov Yu.A., Yarmolenko S.N., Lavrentovich O.D. "Light-Induced
Periodic Lattice of Defects in Smectic A and C Liquid Crystals: Structural and Dynamical
Aspects", Mol. Cryst. Liq. Cryst., 1997, Vol. 292, pp. 183-197.
- Doroshenko A.O., Patsenker L.D., Baumer V.N., Chepeleva L.V., Van'kevich A.V., Shilo
I.P., Yarmolenko S.N., Schershukov V.M., Mitina V.G., Ponomaryov O.A. "Synthesis and
structure of sterically crowded polynuclear aryl derivatives of five-membered
N-heterocycles, orto-analogs of POPOP", Russian Journal of General
Chemistry, 1994, Vol. 64, N 4, Part 2, pp. 588 - 593.
- Doroshenko O.A., Patsenker L.D., Baumer V.N., Chepeleva L.V., Van'kevich A.V.,
Kirichenko A.V., Yarmolenko S.N., Scherschukov V.M., Mitina V.G., Ponomaryov O.A.
"Structure of sterically hindered aryl derivatives of five-membered nitrogen
containing heterocyclic orto-analogs of POPOP", Molecular Engineering,
1994, Vol. 3, pp. 353 - 363.